rs108461529 SNP Detail

Summary

• ID
  rs108461529
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:69275450 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGTTGTTTC CCGGTTCTAC
  ACATGCTCAG GAAATACTGT GTTTTCACCG TTTTCGATCA CTCCCATCCG ACCAGTTTTA
  GTTGAGGGCC TCTCCACGAT CCGCTGTCAT CATTTAGCAG TCCCACTTTT TTCATGACAT
  ACCTTCTTTT TTTTTTTTTT TACTGGTGGA GTAACAAACC CAAGATTATA AATGGTTGGT
  W
  TGAGGTGAAT TGCCAGTGCG GTGGAGCTGC TCTTGAATCG TTATTCTCAG TCCTACAAGT
  AGACTCAGTA GAGCACATCT TAAAATGTTC CCTCTTGCTG AGTGTGATGG CACATGCCTT
  TAATCCAAGA ACTCAGAAGG CAGAGGCAGG GGGATCTCTG TAAACACCTG GGCAACTTGT
  TCTAGAGAAT GAGTTCCAGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss137856402	ENSMUSSNP3498804	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss324083392	CHEV_12_70329663	CHEVERUD	SCREENING_POP	f	SNP		A	T
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs108461529					SNP	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:69275450 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4690	CpG island 4690	390 bp distal
Gm47545	predicted gene, 47545	within coordinates
Pole2	polymerase (DNA directed), epsilon 2 (p59 subunit)	481 bp upstream
Rr403319	regulatory region 403319	362 bp downstream
Rr467012	regulatory region 467012	740 bp distal
Rr467013	regulatory region 467013	33 bp distal
Rr467014	regulatory region 467014	464 bp distal
Rr467015	regulatory region 467015	645 bp proximal
Rr467016	regulatory region 467016	737 bp proximal
Tssr113624	transcription start site region 113624	35 bp downstream
Tssr116494	transcription start site region 116494	492 bp upstream