rs108463593 SNP Detail

Summary

• ID
  rs108463593
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:46993253 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCTCATTC CTTCATTTAG
  AAATAATTAC CAAAAACTAG TAAGAACTGG GCATGGTGGT GCACACCTTT AATCCCAGCG
  CTCATGAGGC AGAGGCAGGC TGGTGGTCTC CTGGTCTACA GAGCAAATTC CAGGAGAGTC
  AGGGCTGCAC AGAGAAAAAC CGAATACAAT GCCCCCCATT CTCCCCCTCA CCCCCAAACA
  A
  GATCACTTTA TTCCTAAAAA TTTCGTTACC TGAGATTTTG TGGACTTCAG AATCTAAGTG
  AAATGCTGTC TCACTAGACT TGGGAATGGG CAGACCTGGC AATAATGAGG GCGTGATGAT
  GTGTTGGGGG TCTTGGGCTG ACTGAGGCAC TAGGGAGAGA GGAGCTGGTC CCGTTCTTTT
  TTTTTTTTTT TTTTTTTTTT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145701078	ENSMUSSNP5727797	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs108463593					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:46993253 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9239	CpG island 9239	751 bp distal
Klhdc3	kelch domain containing 3	1413 bp upstream
Mea1	male enhanced antigen 1	within coordinates
Ppp2r5d	protein phosphatase 2, regulatory subunit B', delta	664 bp downstream
Rr405317	regulatory region 405317	1237 bp downstream
Rr527795	regulatory region 527795	1137 bp distal
Rr527796	regulatory region 527796	552 bp proximal
Tssr5136	transcription start site region 5136	1546 bp upstream
Tssr5137	transcription start site region 5137	1383 bp upstream
Tssr144872	transcription start site region 144872	1849 bp downstream
Tssr144873	transcription start site region 144873	1316 bp downstream
Tssr144874	transcription start site region 144874	1143 bp downstream
Tssr144875	transcription start site region 144875	293 bp downstream
Tssr144876	transcription start site region 144876	287 bp downstream
Tssr148367	transcription start site region 148367	1593 bp upstream
Tssr148368	transcription start site region 148368	1571 bp upstream
Tssr148369	transcription start site region 148369	1552 bp upstream
Tssr148370	transcription start site region 148370	1493 bp upstream
Tssr148371	transcription start site region 148371	1468 bp upstream
Tssr148372	transcription start site region 148372	1394 bp upstream
Tssr148373	transcription start site region 148373	422 bp upstream
Tssr148374	transcription start site region 148374	403 bp upstream