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rs108463893 SNP Detail
Summary
  • ID
    rs108463893
  • Variation Type
    SNP
  • Alleles
    G
Genome Location and Flanking Sequence
  • Location
    Chr5:134684780 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                        C ATTCGCTCTT TTTTTTTTTT TTTTTTCCGA GACAGGGTTT
    CTCTGTGTAG CCCTGGCTGT CCTGGAACTC ACTATGTAGA CCAGGCTGGT CTCAAACTCA
    G
    AAATCGCCTG CTCTGCTTCC CAAGTGCTGG GATTAAAGGC GTGCGCCACT ACGCCCAGCT
    CGCTCTCTCT TCTTGCTTGC TCCGTTGGAG CTCTCAGACA C                    
    
    G = G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
DBA/2J
ss144508956 ENSMUSSNP567708 ENSEMBL ENSEMBL_Sanger f SNP G
SNP Consensus Information
SNP Consensus Type
DBA/2J
rs108463893 SNP G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr5:134684780 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Limk1 LIM domain kinase 1 113 bp downstream
Tssr53665 transcription start site region 53665 1607 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory