rs108464952 SNP Detail

Summary

• ID
  rs108464952
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:36726820 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTACAGGC TGCTAAAGAG
  CAGAAGTTAC TGTTGGCATG ACCTGGCAAT AGCCAGGTAT GCCTGGCTCA CTCTAAAAGG
  GTCTGCATGT CTCTTCCTCG CTGTCTGATC CTCTTTCTTA CTACCTGCCC CTTCTCCCGC
  TCCCCCCTTC CTCTCCCCAT GTGTTCCTGG CCTGCTTCTC CCTCTCCTCT CCCCACCTCC
  Y
  GCCTTTCTCT GCCTCCCACC TTCCCCATGC CCTAAATAAA CTCCATACCA TGCCTCAGGG
  GGAGGGGATG CCTCAGCGGG GGCCTGTGGA GGCAGCCCTT CCACCTCACC CACCATACAG
  CGCCTCTACC AACACGGGTG CTGTGCCTGG GATTTAGAAA CTCACAGGTT GCATGAGCTC
  ATATTTCCGT GCTGCCACAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147608176	ENSMUSSNP115895	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs108464952					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:36726820 () rs orientation: forward

Symbol	Name	Function Class
A830021M18Rik	RIKEN cDNA A830021M18 gene	within coordinates
Cpgi7034	CpG island 7034	760 bp proximal
Gm41297	predicted gene, 41297	within coordinates
Gm49263	predicted gene, 49263	1340 bp downstream
Tssr131078	transcription start site region 131078	1299 bp downstream
Tssr131079	transcription start site region 131079	251 bp downstream
Tssr131080	transcription start site region 131080	197 bp downstream
Tssr131081	transcription start site region 131081	175 bp downstream
Tssr131082	transcription start site region 131082	91 bp upstream
Tssr131083	transcription start site region 131083	284 bp upstream
Tssr131084	transcription start site region 131084	330 bp upstream