rs108465850 SNP Detail

Summary

• ID
  rs108465850
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:112980138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCTT CTGCACTCAG TCAGCACTCA
  S
  CACTCACCCT CAGCACTCAG TCAGC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss138730683	ENSMUSSNP3354460	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss324172781	CHEV_12_114254729	CHEVERUD	SCREENING_POP	f	SNP			G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs108465850					SNP	G	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112980138 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi5198	CpG island 5198			1299 bp distal
Pacs2	phosphofurin acidic cluster sorting protein 2			Intron
				Noncoding-Transcript-Variant
Rr473707	regulatory region 473707			1975 bp distal
Rr473709	regulatory region 473709			1815 bp distal
Rr473710	regulatory region 473710			within coordinates
Tssr115453	transcription start site region 115453			1979 bp downstream
Tssr115454	transcription start site region 115454			1961 bp downstream
Tssr115455	transcription start site region 115455			1950 bp downstream