rs108468107 SNP Detail

Summary

• ID
  rs108468107
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:89814834 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGGGATAT CATATTTTTG
  CTATTAAATA ATAAAGTTTT ATAGATAACC TTTGGATTTT AATCATTTAT GAAAGCTTTC
  TTTTACAGGA TATGATATGT CTACATTTAT TAGACGGTAT AGTAGATACT TAAATGAAAA
  AGCAGTTTCA TACAGACAAG TTGCATTCGA TTTCACAAAA GTGAAGAGAG GGTGAGTTAA
  S
  TTTTCATTTC TAATTCAAAT ATCAAATGGT GTAAAACAGG AATTTTTACC TTGTGAACTA
  CAGAACTTTA TTCAGTTTTA CAAACTTTAT TTTGTTTGAA GAAATGCCAT ATATACTTTC
  TGTAGTAAGA TTTTTAAAAG TTAAATTATC TTTATAACAA CTTTATTGTT ATAATTCTCA
  TGATTAAAAT TCATTTTTTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss145293407	ENSMUSSNP7052228	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs108468107					SNP	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:89814834 () rs orientation: forward

Symbol	Name	Function Class
Picalm	phosphatidylinositol binding clathrin assembly protein	within coordinates
Tssr67722	transcription start site region 67722	1531 bp downstream
Tssr67723	transcription start site region 67723	78 bp downstream
Tssr67724	transcription start site region 67724	426 bp upstream
Tssr67725	transcription start site region 67725	471 bp upstream
Tssr67726	transcription start site region 67726	484 bp upstream
Tssr67727	transcription start site region 67727	548 bp upstream