rs108468774 SNP Detail

Summary

• ID
  rs108468774
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:43924907 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGACAACC AAGGTTTTTC
  AATTATTACT TTGTAAGAAT TCTCTGTCTC TTTGTGTCTG TGTGTATCTG TCTCTGTGTT
  TGTGTGTCTG TGAATGTAAG TGTGTGTGTA TGTGTGTGTG TGTGTGTGTG TGTTGGGGTG
  TGTGTGTCTG TGTATGTCAG AGTCTGTGTG ATGTGTTGGT GTGTCTGTGT ATGACTCTCT
  C
  TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTATGTGTG TGTGCCAGCC
  ACTTCTTGTG CATGTGCAGG TGGTGGAGGC CAGAAGAGAA CGTAGTAGTT CCTGGAAGTA
  GAGTTACAGA TGGTTATGCG CTGTCCTGTA TGGGTTCTGG GAACTGAACT CTGGTCCATT
  TCTAGAGCAG TAGGCACTCA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LP/J	NON/ShiLtJ	QSi3/Ianm	RF/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss130845188	NCBIM37_NT_039649_chr17_43750965	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LP/J	NON/ShiLtJ	QSi3/Ianm	RF/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs108468774					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss130845188	NCBIM37_NT_039649_chr17_43750965	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:43924907 () rs orientation: forward

Symbol	Name	Function Class
Pla2g7	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	1814 bp downstream
Rr527133	regulatory region 527133	1987 bp distal
Tdrd6	tudor domain containing 6	1319 bp downstream
Tssr148139	transcription start site region 148139	1960 bp upstream
Tssr148140	transcription start site region 148140	1910 bp upstream
Tssr148141	transcription start site region 148141	1859 bp upstream
Tssr148142	transcription start site region 148142	1813 bp upstream