rs108471620 SNP Detail

Summary

• ID
  rs108471620
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:87961485 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCTCTGGTA TTCTTCTCCA TCACTTCCTC TAAGCCCTGG
  AACTCCTTAT GCAGCTTCAG CGGCTTCACC TCCTCACACT TCTTTAGCTG CTAGACCATT
  Y
  TGCCATCAAC ATACACACAC ATGTCAGTGT CCCTCTGGGC CTGAGGTAAA TTGATGTGGA
  CTCACAGATG CAAGAACATT CAGCAAACTA AAAGACCAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss137937239	ENSMUSSNP2824247	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs108471620					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:87961485 () rs orientation: forward

Symbol	Name	Function Class
Gm46992	predicted gene 46992	624 bp upstream
Gm51519	predicted gene, 51519	788 bp downstream
Rr387592	regulatory region 387592	871 bp downstream