rs108472785 SNP Detail

Summary

• ID
  rs108472785
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:136721309 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTATCCAG CCTAGTAGAA
  TAGGTAAGCT CTGTCCAGTA AGAGATCTTG TCTCAATACT GTAACTAAAA AATGGCCCAG
  CCAGTAAAAG ATGCTTGCTG CCAAGTCTAA TGACCTGAAT TCAATATTCA GTCTCTCTGA
  TCCCTCACAT GATGAAAGGA GACAACCAAC ACCTGAAATC TGTCGTCTAA CTTACACACG
  C
  ACACACGGAC ACACGGACAC ACACACACAC TATGGGCCAG ATATTAGGGA TAATAGGCAG
  CTCAAAGAGA GATTTGGGGT GGGGAAAGAA CCCACATGAG TGGACAGGGA GCTCTGAGAT
  CCTGTCTAGA AACAAGTACT GCAGGGGCTG AGAGAGTATG CTAGGAATAT TCTGGAAGCT
  TTTAGCAGCT GGACAACAAG                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss144517238	ENSMUSSNP5962155	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs108472785					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:136721309 () rs orientation: forward

Symbol	Name	Function Class
Gm71524	predicted gene, 71524	545 bp downstream
Myl10	myosin, light chain 10, regulatory	691 bp upstream
Rr127468	regulatory region 127468	309 bp distal
Rr127469	regulatory region 127469	492 bp proximal
Tssr49256	transcription start site region 49256	926 bp downstream
Tssr49257	transcription start site region 49257	365 bp upstream
Tssr49258	transcription start site region 49258	501 bp upstream
Tssr49259	transcription start site region 49259	564 bp upstream
Tssr49260	transcription start site region 49260	629 bp upstream
Tssr49261	transcription start site region 49261	1141 bp upstream
Tssr49262	transcription start site region 49262	1159 bp upstream
Tssr49263	transcription start site region 49263	1202 bp upstream
Tssr49264	transcription start site region 49264	1212 bp upstream
Tssr49265	transcription start site region 49265	1666 bp upstream
Tssr49266	transcription start site region 49266	1688 bp upstream
Tssr49267	transcription start site region 49267	1758 bp upstream