rs108472929 SNP Detail

Summary

• ID
  rs108472929
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:54570736 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCTA CCTCAACATG ACTTAGTTAG
  M
  TGGGCTGGTT CAACCTTCTA GAGTC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss136506947	ENSMUSSNP5899180	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
ss322965584	CHEV_9_54511259	CHEVERUD	SCREENING_POP	f	SNP			C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs108472929					SNP	C	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:54570736 () rs orientation: forward

Symbol	Name	Function Class
Acsbg1	acyl-CoA synthetase bubblegum family member 1	1582 bp upstream
Gm39341	predicted gene, 39341	896 bp downstream
Tssr89653	transcription start site region 89653	1736 bp upstream
Tssr89654	transcription start site region 89654	1597 bp upstream
Tssr89655	transcription start site region 89655	1540 bp upstream