rs108474822 SNP Detail

Summary

• ID
  rs108474822
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:10430487 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATAAAGTCA GTTGGTCTTT
  AAGTTTCAAA CCAATTGTGA AATAACTATG GAAGTGGGTT TGTTTTTAGT AAGCAACTAG
  ATACTCTAAG TGCTTACATA CAGACAGTTA CATGGTTATA TGTCCTCGGG CTGCTTCCTT
  GCATCAAATG AATGCTAATA ATAATCTTCT CAAAAGATGA GAGAGAGAGA GAGAGAGAGA
  R
  AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAAACAGTA GTATCATAAA ATAATGTAAG
  TCAAGGGCTT CGGTCCTCTC CCTTGGACCC AGTGAGTACA TGTGGTGATC GTGTTCCTAA
  GTGATCTATC TCTAGAAGAA AGGAAAAGTT GGAGATGGAG CAGGGGGGAT AAAAACCGTT
  TTGGTTTGCT GACACTGCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss130537824	NCBIM37_NT_039638_chr17_10404423	EVA_MGPV3	EVA_MGPV3	f	SNP	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs108474822					SNP	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss130537824	NCBIM37_NT_039638_chr17_10404423	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:10430487 () rs orientation: forward

Symbol	Name	Function Class
Qki	quaking, KH domain containing RNA binding	within coordinates
Rr334119	regulatory region 334119	1886 bp distal
Tssr146373	transcription start site region 146373	161 bp downstream
Tssr146374	transcription start site region 146374	462 bp downstream
Tssr146375	transcription start site region 146375	501 bp downstream
Tssr146376	transcription start site region 146376	600 bp downstream
Tssr146377	transcription start site region 146377	863 bp downstream
Tssr146378	transcription start site region 146378	1600 bp downstream