rs108476116 SNP Detail

Summary

• ID
  rs108476116
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:96358175 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGAAACCC GGGACCCACT
  TCGTCAGCAC AATCCGGAAC AGTCAACATG GCGGCGGCCG TAAGGTGCCT CCGTAGAGGT
  AAGAGGAGCA GTGTTCTTGC GTGGAAAGTA AATCTAGAGC CAAGTTTCCT GTTGCAGCGG
  AATCCATGGC AGAATCTCGT AGGCACCGGT CAGCTTCTCG GTCCTCGAAA TGCTTCCGTG
  R
  TCTTCTGGGC TCCACAGCCC AGAGGGTCAT CAGTGCTTAA AAGCGACACT TAACGCAAGG
  GTTCTCTCTT GGAGCAGGTC ATTTTGAGGA TGAAATGGGA GCGGAAATAC ATTGGCAGTA
  CTTATAGTCA GGGGTGAGGA GTACAAGGCA AGATTCTGTT GTGTGTGTGG GATAGCGGGC
  GTGTTCAGTT TGATAAGCGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss148870837	ENSMUSSNP575394	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs108476116					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:96358175 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16074	CpG island 16074	within coordinates
Gm72185	predicted gene, 72185	248 bp upstream
Mrpl1	mitochondrial ribosomal protein L1	within coordinates
Rr367885	regulatory region 367885	64 bp downstream
Rr614892	regulatory region 614892	1405 bp distal
Rr614893	regulatory region 614893	813 bp distal
Rr614894	regulatory region 614894	275 bp distal
Rr614895	regulatory region 614895	162 bp distal
Rr614896	regulatory region 614896	within coordinates
Tssr47395	transcription start site region 47395	828 bp downstream
Tssr47396	transcription start site region 47396	553 bp downstream
Tssr47397	transcription start site region 47397	155 bp downstream
Tssr51962	transcription start site region 51962	290 bp upstream