rs108477701 SNP Detail

Summary

• ID
  rs108477701
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:144939966 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGGA GAATATCCAA GTTCAAGGTG
  Y
  CTGGAGGATG CAGCCAGACT GGGTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147849017	ENSMUSSNP813637	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss321412962	CHEV_4_144803299	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs108477701					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:144939966 () rs orientation: forward

Symbol	Name	Function Class
Rr87265	regulatory region 87265	835 bp proximal
Rr103536	regulatory region 103536	167 bp distal
Rr103537	regulatory region 103537	289 bp proximal
Tnfrsf1b	tumor necrosis factor receptor superfamily, member 1b	67 bp downstream
Tssr40194	transcription start site region 40194	533 bp upstream
Tssr40195	transcription start site region 40195	885 bp upstream
Tssr44484	transcription start site region 44484	611 bp upstream
Tssr44485	transcription start site region 44485	545 bp upstream
Tssr44486	transcription start site region 44486	260 bp downstream
Tssr44487	transcription start site region 44487	314 bp downstream
Tssr44488	transcription start site region 44488	417 bp downstream
Tssr44489	transcription start site region 44489	509 bp downstream
Tssr44490	transcription start site region 44490	802 bp downstream
Tssr44491	transcription start site region 44491	969 bp downstream
Tssr44492	transcription start site region 44492	1194 bp downstream
Tssr44493	transcription start site region 44493	1355 bp downstream
Tssr44494	transcription start site region 44494	1589 bp downstream
Tssr44495	transcription start site region 44495	1650 bp downstream
Tssr44496	transcription start site region 44496	1719 bp downstream
Tssr44497	transcription start site region 44497	1842 bp downstream
Tssr44498	transcription start site region 44498	1967 bp downstream