rs108481780 SNP Detail

Summary

• ID
  rs108481780
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:34887047 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G AAGTGGCACA CAGTAGGGAT GCAGCCAAAT AGCTCTCTTT
  CTGCCCTTTG ACCCCTGGAG ATAGAGAAAG GCTGAAGTGT GTGTGTGTGT GTGTGTGTGT
  G
  TGTGTGATCT TTACCTTCTG CTCTGTGCCC TTCCATGAGA AACTCCAGCT GGAGAGATGT
  AGTGTCTCTT GGGTATCCCC TGCACTCCTA CCCAGAGTCA C                    
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss148804787	ENSMUSSNP3035201	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs108481780					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:34887047 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18861	CpG island 18861	827 bp distal
Rr645330	regulatory region 645330	1900 bp distal
Rr645331	regulatory region 645331	1227 bp distal
Rr645332	regulatory region 645332	1633 bp distal
Slc7a10	solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	within coordinates
Tssr65893	transcription start site region 65893	1253 bp downstream
Tssr65894	transcription start site region 65894	1214 bp downstream
Tssr65895	transcription start site region 65895	1190 bp downstream