rs108484683 SNP Detail

Summary

• ID
  rs108484683
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156039745 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T GCAGTTTCAT CTGTAAGGGG CTTCACTAAC GTGTCCTTAA
  GTATGTCTTG GGGCTGCACT CTTTGATGAG TTCTCCAAGC TACCTTGTTT CTCCGGGGGG
  T
  GGGGGGAGGG GATTTGTTTT CCTATCTGAG AGTATCTTTG CTTTCAGTGT CCCTTTAAGG
  TTTGAGATGC GCCTCTTTTA GCAGGAAACA GACCACCTTT G                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss148068263	ENSMUSSNP2843861	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs108484683					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156039745 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12545	CpG island 12545	528 bp distal
Gm75148	predicted gene, 75148	1108 bp upstream
Phf20	PHD finger protein 20	within coordinates
Rr374122	regulatory region 374122	1484 bp upstream
Rr397432	regulatory region 397432	1066 bp downstream
Rr568209	regulatory region 568209	1173 bp distal
Rr568210	regulatory region 568210	632 bp distal
Rr568211	regulatory region 568211	1282 bp proximal
Tssr21145	transcription start site region 21145	1050 bp downstream
Tssr27045	transcription start site region 27045	1264 bp upstream