rs108485489 SNP Detail

Summary

• ID
  rs108485489
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48039082 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGCC TGAGACATGT GAGACCCAGT
  Y
  TCAAAAACAT AAACTCACTG ATTCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325406541	CHEV_17_47865106	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs108485489					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48039082 () rs orientation: forward

Symbol	Name	Function Class
D17Mit201	DNA segment, Chr 17, Massachusetts Institute of Technology 201	822 bp distal
Pgc	progastricsin (pepsinogen C)	within coordinates
Tssr5147	transcription start site region 5147	593 bp upstream
Tssr5148	transcription start site region 5148	1153 bp downstream
Tssr145003	transcription start site region 145003	1309 bp downstream
Tssr145004	transcription start site region 145004	575 bp upstream
Tssr145005	transcription start site region 145005	603 bp upstream
Tssr145006	transcription start site region 145006	612 bp upstream
Tssr145007	transcription start site region 145007	639 bp upstream
Tssr145008	transcription start site region 145008	673 bp upstream
Tssr145009	transcription start site region 145009	690 bp upstream
Tssr145010	transcription start site region 145010	1093 bp upstream
Tssr145011	transcription start site region 145011	1106 bp upstream
Tssr145012	transcription start site region 145012	1118 bp upstream
Tssr145013	transcription start site region 145013	1137 bp upstream
Tssr145014	transcription start site region 145014	1923 bp upstream
Tssr145015	transcription start site region 145015	1985 bp upstream
Tssr145016	transcription start site region 145016	1996 bp upstream
Tssr148459	transcription start site region 148459	639 bp downstream
Tssr148460	transcription start site region 148460	660 bp downstream
Tssr148461	transcription start site region 148461	699 bp downstream
Tssr148462	transcription start site region 148462	718 bp downstream
Tssr148463	transcription start site region 148463	1121 bp downstream
Tssr148464	transcription start site region 148464	1199 bp downstream
Tssr148465	transcription start site region 148465	1964 bp downstream
Tssr148466	transcription start site region 148466	1977 bp downstream