rs108485808 SNP Detail

Summary

• ID
  rs108485808
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127483002 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGTTCCAC GGGCATATGA
  TATCCAATTC TGGCCTCCAT GGGCACCTGC ACTCATACAC ATAGATTAAA AAGAAAAAAA
  GAAAAAACAA AAAAGCCCTC CAAATGTCAT TGTCTCCTCC AGCTTTACCT GATCACACAG
  ATTGGTTGTG TCAGTTGTGC TTCTAAAGAT TGCAGCATTA TTTTCCATTC ACACCCCTGT
  Y
  CCCCCAGTAA CCAGTAGACC ACAGAGTTCA TTTCTTCTCT TCCTGACCAT AATCTGGCCT
  TGTGATCTGT TTTAGCAGTG ACACATGGTT TAATAGACAC TGTGCATCTT ACCTAGTTGG
  CACAGTAAAA TGTCCATCTT TCTGTGTTTG GTTTTCTCCT TAGGAAAATC ATCTTCTAAA
  ATGTCTGTTT TGTCCACACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss135869039	ENSMUSSNP5236719	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss320956100	CHEV_3_127392271	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs108485808					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127483002 () rs orientation: forward

Symbol	Name	Function Class
Alpk1	alpha-kinase 1	within coordinates
Tssr35586	transcription start site region 35586	801 bp upstream
Tssr35587	transcription start site region 35587	1395 bp downstream
Tssr35588	transcription start site region 35588	1938 bp downstream