rs108486020 SNP Detail

Summary

• ID
  rs108486020
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:65140923 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACTC TAATCACCTG TTTCATGAGA
  R
  ACTAGTCAAT AATGATTCAT AAAAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss149170487	ENSMUSSNP1945432	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
ss319746475	CHEV_1_65148338	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs108486020					SNP	A	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:65140923 () rs orientation: forward

Symbol	Name	Function Class
Cpgi330	CpG island 330	1184 bp proximal
Cryga	crystallin, gamma A	within coordinates
Gm28845	predicted gene 28845	within coordinates
Tssr102	transcription start site region 102	1112 bp downstream
Tssr7112	transcription start site region 7112	1366 bp downstream
Tssr7113	transcription start site region 7113	1248 bp downstream
Tssr7114	transcription start site region 7114	1234 bp downstream
Tssr7115	transcription start site region 7115	1222 bp downstream
Tssr7116	transcription start site region 7116	1160 bp downstream
Tssr7117	transcription start site region 7117	1121 bp downstream
Tssr7118	transcription start site region 7118	1068 bp downstream
Tssr7119	transcription start site region 7119	1282 bp upstream
Tssr11968	transcription start site region 11968	1317 bp upstream
Tssr11969	transcription start site region 11969	1294 bp upstream
Tssr11970	transcription start site region 11970	1126 bp upstream
Tssr11971	transcription start site region 11971	1102 bp upstream
Tssr11972	transcription start site region 11972	1081 bp upstream
Tssr11973	transcription start site region 11973	1243 bp downstream
Tssr11974	transcription start site region 11974	1318 bp downstream
Tssr11975	transcription start site region 11975	1385 bp downstream
Tssr11976	transcription start site region 11976	1599 bp downstream