rs108489544 SNP Detail

Summary

• ID
  rs108489544
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:30065837 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGTTCGAA GAAGGCTGGA
  GCTGACCCAA GGACAGGTAT CCATGTTCCA CCCCAGCTTC TCCCCTCAAA CTGGTTGCAC
  GCCAATTCTG CGCGCGCGCG CGCGCGCGCA CACACACACA CACACACACA CACACACACA
  CACACACACA AATATCTCTC AGCCTAGAAA TGGTTCCAAT AGCTCAGAGA TGTTTTCATA
  S
  CTTTAAAGAG CTCAATGCAG AGAAGTGAGT TTGGTGCTGA CTACAGGCGT TAGTAATGAG
  CACACTTCAT CAGTGAGATG TGCTGGCCCA GGCAGTGTCC ATGGATCAGG GCACCTAACC
  TGTCCAGCTG TCTCTGAGGG AGGCTGTTAC TATGTATTCC TTAGGATGTA GGGAACTGGA
  ATTCAGCCAG TCTAACTTAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325355139	CHEV_17_29983808	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs108489544					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:30065837 () rs orientation: forward

Symbol	Name	Function Class
Gm56908	predicted gene, 56908	within coordinates
Mdga1	MAM domain containing glycosylphosphatidylinositol anchor 1	within coordinates
Rr330462	regulatory region 330462	237 bp distal
Rr330463	regulatory region 330463	1564 bp proximal
Rr341132	regulatory region 341132	37 bp distal
Rr341133	regulatory region 341133	1905 bp proximal
Rr392501	regulatory region 392501	within coordinates
Rr392502	regulatory region 392502	1920 bp upstream
Tssr143596	transcription start site region 143596	328 bp downstream
Tssr143597	transcription start site region 143597	305 bp downstream
Tssr143598	transcription start site region 143598	1357 bp upstream