rs108490369 SNP Detail

Summary

• ID
  rs108490369
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24907371 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACAGGGCTG ACATATGGCT
  CTGCGGTTAA GAGGACCTGT GTTCACTTCT CAGCACCCAC ATGGCAGCTG CAGACTGTAG
  CTTAGTTACA GGTGATCTAA ATCAAAAATA TCAGAGGTGC CACTCTTATC CCCTTTATAA
  GGGAGTATAA AGGGTTCACA CTGTACTTCT CAGGGCAGTC ACTCCTCCGG TCTTAGAACC
  Y
  TATGGCCTCC CAGAGTTTAC TGGAAGCGTG GAAGCAGGAG CCTTCACCTA CATCAGTGAT
  TTCCAGGGTT GTGGTGGGCC AGTGCACTGT GGAGAGTGAA GTCACGGGAC AGCTGTCTAG
  AGAAATATAC AAGCCTTTCC CTTTTCGAAC CTGACCTCTG CACACAGGAC CTGTGTGTGT
  GTGTGCTCCT CAGTGTCCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325333034	CHEV_17_24825342	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs108490369					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24907371 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8736	CpG island 8736	1590 bp distal
Cpgi8737	CpG island 8737	526 bp distal
Cpgi8738	CpG island 8738	1108 bp proximal
Rr339324	regulatory region 339324	1570 bp distal
Rr339325	regulatory region 339325	within coordinates
Rr405090	regulatory region 405090	1257 bp downstream
Syngr3	synaptogyrin 3	within coordinates
Tssr146762	transcription start site region 146762	1483 bp downstream
Tssr146763	transcription start site region 146763	1504 bp downstream