rs108490603 SNP Detail

Summary

• ID
  rs108490603
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:113392779 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAGACCCA TGTCTCAACT
  TTGGGACAAA GGGGTTGAAT CTTGATTCCC GTTTGCAGAG AATCTTGGTC CTGAAGGCCC
  AGAATCCCCC CAACATGCAT TTAGAATGGG AGAAGTTAGG ACTCACCTGC AGAGACAGTG
  ACCAGAGTCC CTTGGCCCCA GTAAGCAAAC CAGGCACATT GTGACAACAA TGATTAGACC
  Y
  CTGACAATAA ATGATCCTTG GCTAGGGCTC CAGGATGATC TCAGATGGAG GCCAGTGAGG
  GACAAAGAAA GCATAGAAGA GAGGGACCTA GCGGCAATGC TGGCCAGGAT CCCTATAAAT
  CTCTGGCCAT GAAGTATGGG AGCTGAGGAT GTCTGTCTGC GTCAGCCAGG GCTCCCAATG
  ACCCTTTCTG ACTCCCAAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss138742358	ENSMUSSNP467360	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108490603					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:113392779 () rs orientation: forward

Symbol	Name	Function Class
Gm56536	predicted gene, 56536	1792 bp upstream
Igh	immunoglobulin heavy chain complex	within coordinates
Ighd4-1	immunoglobulin heavy diversity 4-1	1369 bp downstream
Ighg	Immunoglobulin heavy chain (gamma polypeptide)	within coordinates
Ighj1	immunoglobulin heavy joining 1	622 bp downstream
Ighj2	immunoglobulin heavy joining 2	309 bp downstream
Ighj3	immunoglobulin heavy joining 3	27 bp upstream
Ighj4	immunoglobulin heavy joining 4	592 bp upstream
Rr148	regulatory region 148	1521 bp distal
Rr149	regulatory region 149	1573 bp distal
Rr150	regulatory region 150	1430 bp distal
Rr554	regulatory region 554	1187 bp distal
Rr555	regulatory region 555	1753 bp distal
Rr403536	regulatory region 403536	1501 bp downstream
Tssr3971	transcription start site region 3971	1686 bp upstream
Tssr3972	transcription start site region 3972	1646 bp upstream
Tssr3973	transcription start site region 3973	1628 bp upstream
Tssr115504	transcription start site region 115504	1068 bp upstream
Tssr118001	transcription start site region 118001	1865 bp upstream
Tssr118002	transcription start site region 118002	1829 bp upstream
Tssr118003	transcription start site region 118003	1763 bp upstream
Tssr118004	transcription start site region 118004	1737 bp upstream
Tssr118005	transcription start site region 118005	612 bp upstream
Tssr118006	transcription start site region 118006	581 bp upstream
Tssr118007	transcription start site region 118007	535 bp upstream
Tssr118008	transcription start site region 118008	508 bp upstream
Tssr118009	transcription start site region 118009	497 bp upstream
Tssr118010	transcription start site region 118010	359 bp upstream
Tssr118011	transcription start site region 118011	261 bp upstream
Tssr118012	transcription start site region 118012	26 bp upstream
Tssr118013	transcription start site region 118013	11 bp upstream
Tssr118014	transcription start site region 118014	83 bp downstream
Tssr118015	transcription start site region 118015	149 bp downstream
Tssr118016	transcription start site region 118016	331 bp downstream
Tssr118017	transcription start site region 118017	661 bp downstream
Tssr118018	transcription start site region 118018	1217 bp downstream
Tssr118019	transcription start site region 118019	1234 bp downstream
Tssr118020	transcription start site region 118020	1290 bp downstream
Tssr118021	transcription start site region 118021	1430 bp downstream
Tssr118022	transcription start site region 118022	1462 bp downstream
Tssr118023	transcription start site region 118023	1627 bp downstream