rs108494489 SNP Detail

Summary

• ID
  rs108494489
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126930752 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTTTTAAG CTTCCAGGAG
  AGTATACCCA GCACATATTA AGCACTACAC TATTGATTTT TTAAAGAGGT TTATTTATTT
  ACTTTATGTA TATGAGTACA CTGTAACTGT CTTCAGACAC ACCAGAAGAT GGCATTGGAT
  CCTGTTAAAG ATGGTTGTGA GCCACCATGT GGTTGCTGGG AATTGAACTC AAGACCACTG
  R
  AAGGCAGTGA GTGCTCTTAA CTGCTGAGCC ATCTCTCCAG CCCCCGATTC TTCCTAGTAG
  AAGATATTGA CAAATTCCCC ACCTGAGATC TAAGAGCCTC AGTGGTAGAG CAGTTGGCAA
  GCATGCAGAA AGCCCTGAGT TCCGTTCTTA GTGCTGAAAA GAAATATCAC CTGCTTAAAA
  GATTTATATG TGACTTGTAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145879479	ENSMUSSNP3112465	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss322451419	CHEV_7_134475094	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs108494489					SNP	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126930752 () rs orientation: forward

Symbol	Name	Function Class
Itgal	integrin alpha L	within coordinates
Tssr69200	transcription start site region 69200	774 bp upstream
Tssr69201	transcription start site region 69201	1990 bp upstream