rs108496047 SNP Detail

Summary

• ID
  rs108496047
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:80913634 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G GGAGGCAGAG GCAGAGGCAG GCGGATTTCT GAGTTCGAGG
  CCAGTCTGGT CTACAAAGTA AGTTCCAGGA CAGCCAGGAC TATACAGAGA AACCCTGTCT
  C
  GAAAAACCAA ACCAAAAAAA AAAAAAAAAA AAAAAAGGAA AGTGAATGAA ATTGTCTCTG
  ATGGCATGCT GTCTAGCCAG CATGGATAAG TCCCTAATTC A                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss137917873	ENSMUSSNP6325280	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108496047					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:80913634 () rs orientation: forward

Symbol	Name	Function Class
5830400J07Rik	RIKEN cDNA 5830400J07 gene	576 bp downstream
Rr261581	regulatory region 261581	within coordinates
Rr261582	regulatory region 261582	1367 bp proximal
Susd6	sushi domain containing 6	within coordinates
Tssr114173	transcription start site region 114173	1920 bp downstream