rs108497666 SNP Detail

Summary

• ID
  rs108497666
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44438938 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T AGTGTAAGAT TGTACCCACT ACACTATGTA GGTACTACAT
  ACGGGGCACT ATTTGTGTGT GTGTGTGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA
  C
  AGAAAGAGAG AGAGAGAGGG AGAGAGAGAG AGAGAGTCAG TCAGAGACAG ACAGAGACAG
  ACAACGATAT AGACACACAG AGAGAGCCTA TGGAGGTCAG A                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss136396660	ENSMUSSNP5975278	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs108497666					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44438938 () rs orientation: forward

Symbol	Name	Function Class
Cxcr5	C-X-C motif chemokine receptor 5	1197 bp upstream
Rr401337	regulatory region 401337	850 bp downstream
Rr677693	regulatory region 677693	730 bp distal
Rr677694	regulatory region 677694	716 bp proximal
Tssr89167	transcription start site region 89167	1669 bp upstream
Tssr89168	transcription start site region 89168	1218 bp upstream
Tssr89169	transcription start site region 89169	1201 bp upstream
Tssr89170	transcription start site region 89170	1140 bp upstream
Tssr89171	transcription start site region 89171	1126 bp upstream