rs108499018 SNP Detail

Summary

• ID
  rs108499018
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:20360937 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A CTAAATGGAA GGATGTTCAC AATGGTGGAA AGTGGCAGAG
  AGTTGCAGAG TTTGGGGATT GCAGTTTATT GCCTTGTGCA GGAATAAAAG CTACCCACTG
  C
  CACAGCTATT TTTGAAGGCG GAACTTATTC ACAGGTAGTG GTGGTAAAAT ACCAGAAGCC
  ATACATAACG TCTGACCTCA GCTGCTACCT CATACAGCAT A                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss137276239	ENSMUSSNP413628	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs108499018					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:20360937 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4468	CpG island 4468	1136 bp proximal
Gm49692	predicted gene, 49692	1858 bp downstream
Gm49697	predicted gene, 49697	1579 bp upstream
Gm61293	predicted gene, 61293	1281 bp upstream
Rr463625	regulatory region 463625	1144 bp proximal
Tssr112921	transcription start site region 112921	1279 bp upstream