rs108499832 SNP Detail

Summary

• ID
  rs108499832
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:90979242 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCAC TGTCCGTCCC CCCCACCCCC
  R
  GGGAGACAGT GGGAGGAGTG AGGGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss144937836	ENSMUSSNP631653	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs108499832					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:90979242 () rs orientation: forward

Symbol	Name	Function Class
Cpgi568	CpG island 568	990 bp proximal
Lrrfip1	leucine rich repeat (in FLII) interacting protein 1	within coordinates
Rr18304	regulatory region 18304	within coordinates
Rr29813	regulatory region 29813	558 bp proximal
Rr396168	regulatory region 396168	1241 bp upstream
Tssr8030	transcription start site region 8030	1984 bp downstream
Tssr8031	transcription start site region 8031	1815 bp downstream
Tssr8032	transcription start site region 8032	1654 bp upstream
Tssr8033	transcription start site region 8033	1902 bp upstream
Tssr12924	transcription start site region 12924	1296 bp downstream
Tssr12925	transcription start site region 12925	1314 bp downstream
Tssr12926	transcription start site region 12926	1334 bp downstream
Tssr12927	transcription start site region 12927	1367 bp downstream
Tssr12928	transcription start site region 12928	1517 bp downstream