rs108500352 SNP Detail

Summary

• ID
  rs108500352
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:23864905 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTGGAACT CACTTTGTAG
  GCCAGGCTGG CCTCGAACTC AGAAATCCGC CTGCCTCTCC CTCCCGAATG CTGGGATTAA
  AGGCGTGCGC CACCACGCCC GGCCGGACTA AGCTTTTTAA ATCCAAAAAT CTGCACACCA
  GGAGAAAAGC AAACGGAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA
  M
  ACAATCACTG AGGAAAAGTT GAGGACCTGC AGAGCCTCCT CTCCAGCTAG AGAAACGCAG
  AGTACGAGAT CTGATTTAGG TGAACAACGG TTGAGAGCAC TCAGGAGTAA TCAGGGTTCA
  GGCTGCGGGT CAGAATGGAA GGAAAGTGGT GAAAGGAATG TGTTGACTGC TCCGGGCCTG
  GAGCCACAGG AGGAGCTCCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CBA/J	CZECHII/EiJ	FVB/NJ	I/LnJ	LP/J	MA/MyJ	NZB/BlNJ	QSi3/Ianm	RF/J	SJL/J	SM/J	ST/bJ	WSB/EiJ
ss130539463	NCBIM37_NT_039649_chr17_23782898	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	A	C	A	C	C	C	C	C	C	C	C	C	C	A	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CBA/J	CZECHII/EiJ	FVB/NJ	I/LnJ	LP/J	MA/MyJ	NZB/BlNJ	QSi3/Ianm	RF/J	SJL/J	SM/J	ST/bJ	WSB/EiJ
rs108500352					SNP	C	C	A	C	A	C	C	C	C	C	C	C	C	C	C	A	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss130539463	NCBIM37_NT_039649_chr17_23782898	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:23864905 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8679	CpG island 8679	460 bp distal
Mmp25	matrix metallopeptidase 25	899 bp upstream
Rr339268	regulatory region 339268	304 bp distal
Tssr146620	transcription start site region 146620	973 bp upstream
Tssr146621	transcription start site region 146621	935 bp upstream
Tssr146622	transcription start site region 146622	894 bp upstream
Tssr146623	transcription start site region 146623	876 bp upstream
Tssr146624	transcription start site region 146624	858 bp upstream
Tssr146625	transcription start site region 146625	670 bp upstream
Tssr146626	transcription start site region 146626	622 bp upstream