rs108502251 SNP Detail

Summary

• ID
  rs108502251
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:47818087 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTTTGAGT CTTGTAACCC
  AGGTTGGCCT GAAACTATGT GGGTGAGCTG ACTTTGAATG TCTGGTCTCT CTGAAGAGTG
  CCAGGGTTAA AGGCATGTGC TACCTACCAC ACCTGCTTTG TCATAGGCAC ATTCAGACTC
  TCTCGGGGCT GGTGAGATGG CTCAGTGGGT AAGAGCACCC GACTGCTCTT CCAAAGGTCT
  K
  GAGTTCAAAT CCCAGCAACC ACATGGTGGC TCAAAACCAT CTGTAATGAG ATCTGACTCC
  CTCTTCTGGA GTGTCTGCAG ACAGACTTAG ACTCTCTCAT CCTATGTCTC ACGAAGAACA
  GTGGACCTTG GAATCTGATT AAGAAGATGA TATAGAAATG GGAGGAGCTT AAGGTGCTCT
  CCCCTCGAAT CTCCCGTGTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398348133	MGP_WTSI_17_47644111	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G	G	G	G	T	G	G	G	G	T	T	G	G	G	T	G	T	T	T	G	G	G	T	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs108502251					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G	G	G	G	T	G	G	G	G	T	T	G	G	G	T	G	T	T	T	G	G	G	T	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398348133	MGP_WTSI_17_47644111	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47818087 () rs orientation: forward

Symbol	Name	Function Class
Ccnd3	cyclin D3	Intron
Cpgi9262	CpG island 9262	1817 bp distal
Rr370267	regulatory region 370267	802 bp upstream
Rr528024	regulatory region 528024	1261 bp distal
Rr528025	regulatory region 528025	within coordinates
Rr528026	regulatory region 528026	1926 bp proximal
Tssr144923	transcription start site region 144923	1998 bp downstream
Tssr144924	transcription start site region 144924	1980 bp downstream
Tssr144925	transcription start site region 144925	1957 bp downstream
Tssr144926	transcription start site region 144926	1934 bp downstream
Tssr144927	transcription start site region 144927	1125 bp upstream
Tssr148442	transcription start site region 148442	824 bp downstream