rs108502521 SNP Detail

Summary

• ID
  rs108502521
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172035969 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACTA GTAGCATGCA TAATATGGTG
  R
  TATACCACCG TAAGACTTAG AATGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J	LG/J	SM/J
ss120010293	PARCsnp_1.07414	PARC_SEQ	INBRED	f	SNP	A	G
ss320123223	CHEV_1_174138533	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J	LG/J	SM/J
rs108502521					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172035969 () rs orientation: forward

Symbol	Name	Function Class
Casq1	calsequestrin 1	1492 bp downstream
Cpgi1038	CpG island 1038	1449 bp distal
Gm17224	predicted gene 17224	within coordinates
Pea15a	proliferation and apoptosis adaptor protein 15A	1671 bp upstream
Rr396578	regulatory region 396578	862 bp downstream
Rr423485	regulatory region 423485	1609 bp distal
Rr423486	regulatory region 423486	1108 bp distal
Tssr294	transcription start site region 294	1769 bp upstream
Tssr295	transcription start site region 295	1719 bp upstream
Tssr296	transcription start site region 296	1643 bp upstream
Tssr297	transcription start site region 297	1609 bp upstream
Tssr10179	transcription start site region 10179	1921 bp upstream
Tssr15164	transcription start site region 15164	1737 bp upstream
Tssr15165	transcription start site region 15165	1647 bp upstream
Tssr15166	transcription start site region 15166	1616 bp upstream
Tssr15167	transcription start site region 15167	696 bp upstream
Tssr15168	transcription start site region 15168	1704 bp downstream
Tssr15169	transcription start site region 15169	1791 bp downstream
Tssr15170	transcription start site region 15170	1818 bp downstream
Tssr15171	transcription start site region 15171	1832 bp downstream
Tssr15172	transcription start site region 15172	1914 bp downstream