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rs108506454 SNP Detail
Summary
  • ID
    rs108506454
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr12:54791891 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          CTCAGGTCCC TGCCCTCACA CACTACATAC ACTCATCTGA
    AAATAGAATC GGGTTGGAGA GCGGTTTCGG TGACTGAGCA CACCGGCTGC TCTTCCCTAG
    R
    ACCCTTGGTT GGTTTCCCAG CATCCACTAC ACTGAAGCTC TGGTTCTGGG GACCCTATGT
    TCTCCTCTAC CCCACCTCCC CACTTTCTGG CCTCCAGCA                       
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
DBA/2J
ss137771123 ENSMUSSNP4803158 ENSEMBL ENSEMBL_Sanger f SNP G A A
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
DBA/2J
rs108506454 SNP G A A
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr12:54791891 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rr260899 regulatory region 260899 291 bp distal
Rr260900 regulatory region 260900 1310 bp proximal
Rr263772 regulatory region 263772 867 bp distal
Snx6 sorting nexin 6 1233 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory