rs108506532 SNP Detail

Summary

• ID
  rs108506532
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:180075507 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGACATAT GGGGGAATTC
  TTGCCAAGCA GGGGTCTGCA AGACTATAAG GTCCCCTTCC TCTTTGAGAA CTGGCTGTCT
  GTCATATCTT AAACACACAC CCACTAGACC CGAGATCTCT TCCGTATCTC TTCTGGCAAC
  AGTGAATTCT CTTCTCACAG ATATCTAGAT CAGGGATGTG CCTCGGTGGC AGAGCCTGCC
  R
  TGCCTGAGGC CTTGGGTTTC ATCCACGGCC CCACATCAAA GTTATCCTTA AGCCTGGGTA
  TTCTGTTGCT GGTCTCTTCA ATGCTGGGCT AGAGTAGACT ATTATCTTAT CTGTTGTGGT
  AAGTACACAG TTCAAGAGTT TATTCTGGCT CTCGCCTCAT TGTACAGGCA CATCACGGTG
  GGAGGAGCTT GAAGCAGCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146378731	ENSMUSSNP4942099	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs108506532					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:180075507 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Psen2	presenilin 2			Intron
				Noncoding-Transcript-Variant
Rr372537	regulatory region 372537			1926 bp upstream
Rr424422	regulatory region 424422			1847 bp distal
Rr424423	regulatory region 424423			within coordinates
Rr424424	regulatory region 424424			198 bp proximal
Rr424425	regulatory region 424425			933 bp proximal
Rr424426	regulatory region 424426			1812 bp proximal
Tssr15531	transcription start site region 15531			1987 bp upstream