rs108507361 SNP Detail

Summary

• ID
  rs108507361
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:64698295 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGGTAATC TGTAACTACT
  CTGGAACCCA GTTTCCTCAT CACTTGCTCT ATTTTTGGGT CAAACTGCAC GGACGCTGCC
  TGTGCATGCT GCATGATTTC CCAACTCACT CTCCTTGTCT TTATAGTTAC TTCTCTAACA
  TGATCTTCCA GCCTGGCTGG TAGCTCATCT AGTAAGTGCT TGTCTAGCTA GCATAAAGCC
  M
  TGGCCATGTC TCAAACGAAA AGGACGTTTT CAATTTTCTA ATATATAGCA GCAGATTTTT
  TTTAAAAGCC ATCATTTATA TGCATACATC ACATTTAGCT CCATTTTAAT GTGCCATACT
  TCTGTGTGCC TTATATCTGC CAAACAGATG AAGATCAACA GAGGTGACTG AACTTGCATG
  AGTCCCTGAA TCTTTCTTTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136565260	ENSMUSSNP59115	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108507361					SNP	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:64698295 () rs orientation: forward

Symbol	Name	Function Class
Rr401455	regulatory region 401455	1281 bp downstream
Rr681316	regulatory region 681316	1159 bp distal
Rr681317	regulatory region 681317	1 bp distal
Rr681318	regulatory region 681318	251 bp proximal
Rr681319	regulatory region 681319	1054 bp proximal
Tssr2909	transcription start site region 2909	203 bp upstream
Tssr85622	transcription start site region 85622	1356 bp downstream
Tssr85623	transcription start site region 85623	1336 bp downstream
Tssr85624	transcription start site region 85624	46 bp downstream
Tssr90157	transcription start site region 90157	185 bp upstream