rs108507411 SNP Detail

Summary

• ID
  rs108507411
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:20887745 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTCACTGC CCCAAACCCT
  GCTTCCTGAG AACCCCCATC CAGTCTTGCA AAGTCTCCAG CTCAAAGCGC TCGGATTCCG
  CCTTTCTCTT CAGCGCCAAC TTCCTGCCCG AAGGAAGGCG GGGAGCTCAG TCTGGGGGTG
  CGCCACTGAG TAGGTGGCGA GCTGCCTGGA GTAGTGGGCA GGGGCGCATG GTAGATGATC
  Y
  GTTCCCTCGG TGCAGCAGAG CCTGGAGCAG CGCGTGCAAC GCCTGTACGA GCGCCTGACC
  CCGGACCGGG CCCCCCAGCT GGGATCTCAG GGTCTCCGTG AACCGCGGCC GCCCAGATCG
  GAACCTCCCC TCTGCCCCGC GCGCTCACCT GGCTAGGCCG GCCGGGGTCC CTGCCCTGGC
  CTGAGTGGCC TTGGCGTCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss136225113	ENSMUSSNP6211330	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs108507411					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:20887745 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21408	CpG island 21408	within coordinates
Rr193935	regulatory region 193935	656 bp proximal
Rr206018	regulatory region 206018	within coordinates
Rr383049	regulatory region 383049	577 bp upstream
S1pr2	sphingosine-1-phosphate receptor 2	within coordinates
Tssr83937	transcription start site region 83937	522 bp downstream
Tssr88347	transcription start site region 88347	222 bp downstream
Tssr88348	transcription start site region 88348	272 bp downstream
Tssr88349	transcription start site region 88349	313 bp downstream