rs108507522 SNP Detail

Summary

• ID
  rs108507522
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:85341765 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGCCTGAT TGTGTGTTTC
  TCTCCTGCTT CTTCCAATCC TCCTGCTCAG GTCTGTATCT TTCCTGCTTC TTCCAAGTCG
  TTTATTGTAG ACTCTCGCCC CACTGGAGCC TCCCTCCTCT CACCGTGACT CTGCTGGTCC
  GAGGACAGCA GCTTTCCAGC TAAGCACACT CACGCATCAT GACCATGTGA CGTCCCTCTC
  Y
  GTGACAGCTC ATCCACCAGG CTCTGTGCAG GACCAGCTCA TGGCAGTCAG CAGCGGGTCT
  TGGCAGGCTT CTTGCTCTAA CTAACCATCT CCTTGTTAAC AAACTACGCC TTGTTAAATC
  GCCATTAGTA AACTCGTACC GTGTGCAGGC TGTCTGTTGA GGGTCTTACA TTCATGAATT
  CATCCAGTCT ATTCCCCCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146149172	ENSMUSSNP80288	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs108507522					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:85341765 () rs orientation: forward

Symbol	Name	Function Class
Rr343448	regulatory region 343448	within coordinates
Slc3a1	solute carrier family 3, member 1	within coordinates
Tssr146077	transcription start site region 146077	702 bp downstream