rs108509663 SNP Detail

Summary

• ID
  rs108509663
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:69714777 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGTGCTAGG AACACAGGAC AGAAGGATCT CTGAGGCTTG
  CTGGTCAGCC AGTTTAGGTG AATGGGTAAG CTCTAAATAC AGTAAGACCC TGGCTCAAAC
  K
  TATGGAGAGC AACTGAGAAA AACACCCTAT GTTGACCTCT ACCCTCCATA CACACAAGAC
  ACACGAACAT ACACACGCTA AATACATAGC AGACTAGTC                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146730634	ENSMUSSNP4244863	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	T
ss320332411	CHEV_2_69722490	CHEVERUD	SCREENING_POP	f	SNP				G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs108509663					SNP	G	G	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69714777 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11720	CpG island 11720	800 bp proximal
Mettl5	methyltransferase 5, N6-adenosine	within coordinates
Mettl5os	methyltransferase 5, opposite strand	1249 bp upstream
Rr44276	regulatory region 44276	177 bp distal
Rr50128	regulatory region 50128	1177 bp distal
Rr56967	regulatory region 56967	within coordinates
Rr397023	regulatory region 397023	452 bp upstream
Tssr24451	transcription start site region 24451	1124 bp downstream