rs108509896 SNP Detail

Summary

• ID
  rs108509896
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:56426936 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAAGCCAG ATAAACACAA
  GGTGGCCTGG GGGCCGGCAC AGGAAGAGTG AGAGGTGGAA GAGTTGTGGC GAGTGGAGAG
  GACCCAGAGA GGGAGTCCGA GAATAGCATT CCTGGCTGAG GGAATGAGGA ATCTGCACAC
  TGACATGGGA CCACATTGGC TCAGTGGCGA GCGGGGTGCC CTTGGCCAGC ACCCCAGCCA
  Y
  CATCCTCACA GGGACCCCAG CTCTGCCACG TCCAGCAGCC GCTGACCCTT CATGGCCTCG
  GGCCCCGCAC AGCGCGTGTC GTTCTGTGAG AACATCTTGT TTCGGTTGGC GACCAGCCAG
  CGGCAAAGGT CCGCCAGGTT CTTGTCACAG ATCCAGGGGT TGTGGGAGAT GTCGAAGCCG
  TCCTGCATGT CGCGGGTCGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398551806	MGP_WTSI_17_56259359	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs108509896					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398551806	MGP_WTSI_17_56259359	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:56426936 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9340	CpG island 9340	within coordinates
Gm56918	predicted gene, 56918	within coordinates
Lrg1	leucine-rich alpha-2-glycoprotein 1	within coordinates
Rr332132	regulatory region 332132	936 bp distal
Rr340022	regulatory region 340022	within coordinates
Tssr5174	transcription start site region 5174	258 bp upstream
Tssr5175	transcription start site region 5175	1988 bp downstream
Tssr148750	transcription start site region 148750	180 bp downstream
Tssr148751	transcription start site region 148751	357 bp downstream
Tssr148752	transcription start site region 148752	412 bp downstream
Tssr148753	transcription start site region 148753	677 bp downstream
Tssr148754	transcription start site region 148754	735 bp downstream
Tssr148755	transcription start site region 148755	857 bp downstream
Tssr148756	transcription start site region 148756	896 bp downstream
Tssr148757	transcription start site region 148757	1074 bp downstream
Tssr148758	transcription start site region 148758	1094 bp downstream
Tssr148759	transcription start site region 148759	1961 bp downstream