rs108511867 SNP Detail

Summary

• ID
  rs108511867
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:33393404 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGTTAAG AATTCTCTTT
  ATAGCTCTAT ACCCCATTTT CTAATTGTGT TATTTTGCTT GTGTCTAATT TCTTGAGTTC
  TTTATGTATT TTGATATTGG CCCTTTGTTA TATGTAGTGT TGGTGAAGAT CATTTTCAAT
  ACTATAGGCT GTTTTGTCCG ATTCACAGTG TCTTTTGCCA TACAGAAGCT TTTTCAGTTT
  Y
  ATGAGATCAC ATTTGTCACT TGTTGATCTT AGAGTGTATT TCTTACTGTG ATAAAATTAA
  ACGTAACAAA ATTTGCCATT TAGCTGGGGA AGTCTTGAAG GAATAGAGAT TTGTTGGTTG
  ATGGGTAAAC AAGTTTTGGC TATGGTTAAG CAATAGGTAT TGAGATCTAT TGCAGAAAAA
  AAAAGACCTA ATGCAGGACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	RF/J	SJL/J	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss398049666	MGP_WTSI_17_33311375	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	C	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	C	T	T	T	C	T	C	C	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	RF/J	SJL/J	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs108511867					SNP	T	T	C	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	C	T	T	T	C	T	C	C	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398049666	MGP_WTSI_17_33311375	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:33393404 () rs orientation: forward

Symbol	Name	Function Class
Or10h1b	olfactory receptor family 10 subfamily H member 1B	1986 bp upstream