rs108512115 SNP Detail

Summary

• ID
  rs108512115
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:87841773 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T TTAGTTTCCA AGAACTTACC AAAAAACATA AGGAGGAGAA
  AATAACCTGG AAATCCTCTT AGACCTTAAA TGCAAACATA AATAAATAAA TAAATAGATA
  G
  ATAGATAGAT AGATAGATAG ATAGATAGAT AGATAGTTTC CCTTTTAGTC TAACACTTGC
  CTAAAATGTG TTCCATGTAG CAAATGAAAC GCTGCAATCT T                    
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148786401	ENSMUSSNP2779142	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs108512115					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:87841773 () rs orientation: forward

Symbol	Name	Function Class
Csn2	casein beta	within coordinates
D5Mit12	DNA segment, Chr 5, Massachusetts Institute of Technology 12	within coordinates
D5Mit16	DNA segment, Chr 5, Massachusetts Institute of Technology 16	within coordinates
D5Mit16.1	DNA segment, Chr 5, Massachusetts Institute of Technology 16.1	54 bp proximal
D5Mit16.2	DNA segment, Chr 5, Massachusetts Institute of Technology 16.2	51 bp distal
Tssr1529	transcription start site region 1529	640 bp upstream
Tssr46883	transcription start site region 46883	587 bp upstream
Tssr46884	transcription start site region 46884	600 bp upstream
Tssr46885	transcription start site region 46885	628 bp upstream
Tssr46886	transcription start site region 46886	656 bp upstream
Tssr46887	transcription start site region 46887	673 bp upstream
Tssr46888	transcription start site region 46888	742 bp upstream
Tssr46889	transcription start site region 46889	791 bp upstream
Tssr46890	transcription start site region 46890	806 bp upstream
Tssr46891	transcription start site region 46891	850 bp upstream
Tssr46892	transcription start site region 46892	854 bp upstream
Tssr46893	transcription start site region 46893	882 bp upstream
Tssr46894	transcription start site region 46894	929 bp upstream
Tssr46895	transcription start site region 46895	952 bp upstream
Tssr46896	transcription start site region 46896	1047 bp upstream
Tssr51613	transcription start site region 51613	1235 bp upstream
Tssr51614	transcription start site region 51614	1172 bp upstream
Tssr51615	transcription start site region 51615	1116 bp upstream
Tssr51616	transcription start site region 51616	1082 bp upstream
Tssr51617	transcription start site region 51617	1073 bp upstream
Tssr51618	transcription start site region 51618	616 bp downstream
Tssr51619	transcription start site region 51619	654 bp downstream
Tssr51620	transcription start site region 51620	663 bp downstream
Tssr51621	transcription start site region 51621	672 bp downstream
Tssr51622	transcription start site region 51622	710 bp downstream
Tssr51623	transcription start site region 51623	735 bp downstream
Tssr51624	transcription start site region 51624	753 bp downstream
Tssr51625	transcription start site region 51625	759 bp downstream
Tssr51626	transcription start site region 51626	769 bp downstream
Tssr51627	transcription start site region 51627	784 bp downstream
Tssr51628	transcription start site region 51628	825 bp downstream
Tssr51629	transcription start site region 51629	917 bp downstream
Tssr51630	transcription start site region 51630	1011 bp downstream
Tssr51631	transcription start site region 51631	1060 bp downstream
Tssr51632	transcription start site region 51632	1354 bp downstream