rs108513349 SNP Detail

Summary

• ID
  rs108513349
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:171016395 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A GCAGTGGTGG TGCATACTTT TAATCCCAGC ACTCAGGAAG
  CAGAGGCAGG CGGGCTTTTT TTGTTTTTGT TTTTGTTTTT GTTTTTGTTT TTTGTTTTTT
  T
  TTTTTGGTTT TTTGTTTTTT GTGAGCCCTA GGTCAGCCTG ATCTACTGAG TTCCAGGACA
  TCCAGGGCTT CACAGAGAAG ACCCTGTCTC CGAAACCCAA A                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss146156054	ENSMUSSNP587224	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	A/J
rs108513349					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171016395 () rs orientation: forward

Symbol	Name	Function Class
Gm70111	predicted gene, 70111	835 bp upstream
Pcp4l1	Purkinje cell protein 4-like 1	Intron
Rr423235	regulatory region 423235	190 bp distal
Rr423236	regulatory region 423236	345 bp proximal
Rr423237	regulatory region 423237	846 bp proximal
Rr423238	regulatory region 423238	1499 bp proximal