rs108514044 SNP Detail

Summary

• ID
  rs108514044
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:40154180 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCGCACTTTT CTCAGTGGTT CGCGTGGTCC TTGTGGATGT
  GTGAGGCGCC CGGTTGTGCC CTCACGTGTT TCACTTTGGT CGTGTCTCGC TTGACCATGT
  T
  CCCAGAGTCG GTGGATGTGG CCGGTGGCGT TGCATACCCT TCCCGTCTGG TGTGTGCACG
  CGCTGTTTCT TGTAAGCGTC GAGGTGCTCC TGGAGCGTT                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325385428	CHEV_17_39980234	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs108514044					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:40154180 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9159	CpG island 9159	within coordinates
Gm26917	predicted gene, 26917	within coordinates
Rn18s	18S ribosomal RNA	1882 bp proximal
Tssr148051	transcription start site region 148051	31 bp downstream
Tssr148052	transcription start site region 148052	194 bp downstream
Tssr148053	transcription start site region 148053	339 bp downstream
Tssr148054	transcription start site region 148054	842 bp downstream
Tssr148055	transcription start site region 148055	1086 bp downstream
Tssr148056	transcription start site region 148056	1428 bp downstream
Tssr148057	transcription start site region 148057	1833 bp downstream