rs108514644 SNP Detail

Summary

• ID
  rs108514644
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:81252042 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGAGGGGCG TGATCGGCCG
  GGGTAGCGGG TGGGTGGGTT GTGGAGTGCG GGGAGCCGGC TTAGGGGGAG GGCCGCGGGA
  AAGTGAGAGC GCGGGAGGGC GCGGGGCCGG GCGGGAGGAG GCTCCCGCGG GGGAGAGAGG
  CGGGCGGGCG GCCGTGGGAG GGAGAGTGCG GGGCAGGTGG CAGGGAGGGA GGGCGCTCGG
  Y
  GGAGCGCCGA GGCCAAGTGC ATTGTGTCTG GCGGCGGCGG CGAGCCCACC GGCGGCGGCT
  GCTGGCCGGG AAGCCATGGA GCCACGGGCG CTCGTCACGG CGCTAAGCCT CGGCCTCAGC
  CTTTGCTCCC TGGGGCTGCT CGTCACGGCC ATCTTCACCG ACCACTGGTA CGAGACCGAC
  CCCCGGCGCC ACAAGGAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss399196559	MGP_WTSI_17_81343953	EVA_MGPV3	EVA_MGPV3	f	SNP	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	T	T	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs108514644					SNP	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	T	T	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss399196559	MGP_WTSI_17_81343953	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:81252042 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9543	CpG island 9543	within coordinates
D17Mit258	DNA segment, Chr 17, Massachusetts Institute of Technology 258	1951 bp proximal
Gm65830	predicted gene, 65830	within coordinates
Gm65833	predicted gene, 65833	285 bp downstream
Rr340234	regulatory region 340234	within coordinates
Tmem178	transmembrane protein 178	19 bp upstream
Tssr145973	transcription start site region 145973	756 bp downstream
Tssr145974	transcription start site region 145974	609 bp downstream
Tssr145975	transcription start site region 145975	within coordinates
Tssr145976	transcription start site region 145976	37 bp upstream