rs108515774 SNP Detail

Summary

• ID
  rs108515774
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:32904414 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCCTGTTA ATGATTTTGC
  TAGATACACT GTCGTCTCTG ACGAGTCTCT GACGCGTAGG GATACCCCTA CTTGGCTGTG
  GATGTTAGAC TCAGACTTAC CTCTGCTAAC CTCAGAGTTT TGCTCCCAAA TCTCTCCTGC
  CCTCAACCTC CATCCCCATG CCCATCCTCC ATCCCACCCC CCCACCCCCC GCCCTCCCCC
  R
  TGATGTGAGA GGGAACAAGT TCTAAGGCTC TGGTGTTCAT GCTGTGACCC TGAATTGATT
  TCACTCTGTA CCCTGCTGAC CCAACCCCCT CCTTTTGGCC TTCTGCCCCA GAGGGGAGGA
  GGCAGTTGGG CCTGTGAAGG ATTGGCTGAC ACAACTGAGC TCAGCCTCCT TCAGAGCAGA
  AGCCAGGAAC AAAGAAACTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	CAST/EiJ	CBA/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SWR/J	WSB/EiJ
ss398037640	MGP_WTSI_17_32822385	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	CAST/EiJ	CBA/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SWR/J	WSB/EiJ
rs108515774					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398037640	MGP_WTSI_17_32822385	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:32904414 () rs orientation: forward

Symbol	Name	Function Class
Cyp4f15	cytochrome P450, family 4, subfamily f, polypeptide 15	191 bp upstream
Rr339615	regulatory region 339615	186 bp proximal
Tssr143733	transcription start site region 143733	145 bp upstream
Tssr143734	transcription start site region 143734	170 bp upstream
Tssr143735	transcription start site region 143735	199 bp upstream
Tssr143736	transcription start site region 143736	215 bp upstream
Tssr143737	transcription start site region 143737	653 bp upstream