rs108517750 SNP Detail

Summary

• ID
  rs108517750
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:30224457 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ctcgggcct cggggtggcg gtggggaccc
  gagggaggcc agagccccgg gaagctgggc cgcggaagcc gggcctcggg ggagcgggcg
  gggaccgcgg cCTCGGCCTG AGGAGGGCTG CGGGAAGGGG ACGCTGGTGg gggggggggg
  R
  ggaggaagaa gaggaggaat aggaataaga ggagcaggag gaCCAGGACC GCTCGGGCCG
  CGCTACCCTC TGTGGGACTC GCTGGCCCGA GGCCGGCTTG GGGTGAGGGG CCACGGGTGA
  GCCGGAGGGA CGAGGTGGCG GCGCTGGCAC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325355624	CHEV_17_30142428	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs108517750					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:30224457 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8934	CpG island 8934	within coordinates
Gm50019	predicted gene, 50019	691 bp upstream
Rr525144	regulatory region 525144	1248 bp distal
Rr525145	regulatory region 525145	740 bp distal
Rr525146	regulatory region 525146	409 bp distal
Rr525147	regulatory region 525147	within coordinates
Tssr143600	transcription start site region 143600	1090 bp downstream
Tssr143601	transcription start site region 143601	964 bp downstream
Tssr143602	transcription start site region 143602	637 bp downstream
Tssr143603	transcription start site region 143603	607 bp downstream
Tssr143604	transcription start site region 143604	385 bp downstream
Tssr143605	transcription start site region 143605	296 bp upstream
Tssr143606	transcription start site region 143606	404 bp upstream
Tssr147242	transcription start site region 147242	843 bp upstream
Tssr147243	transcription start site region 147243	152 bp downstream
Zfand3	zinc finger, AN1-type domain 3	within coordinates