rs108519410 SNP Detail

Summary

• ID
  rs108519410
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:46855542 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTCTACTA GAGCACGGAG
  TCAAGTCACA GTCAGCAGCT GCAGACAGTC CGAAGCAGCC CCGCAGCCCA CACCTGGGGC
  TACAACAAAA GCCCATTCTC ATAATATAGT TCTGGTTTTT AAAAGAAACC CAAATGCCAG
  AATTCTCAGA AATGTCACTG CAGGGGAGGT GGGCACTAAA GAGATGAGCA GGGGTGAAGA
  R
  CATTTGCCGC TCTACAAAAT AACCAAGGGT CAGTGCCTAG CACCCACATG GCAGCTCCAG
  ACCATCTGTA ACTCCAATCC CAAGAGTCCA ACACCCTCTT CTGACCTCCA AGGGCACCCT
  GCACATACAT ACAGGCAAAA CACTCATGCA CACAAAATAA ATCCTTTTTA ATTTATTTAA
  AAATAAAATA TATGGCCGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss145700328	ENSMUSSNP6497639	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs108519410					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:46855542 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9232	CpG island 9232	1341 bp proximal
Cul9	cullin 9	within coordinates
Rr527757	regulatory region 527757	1099 bp proximal
Rr527758	regulatory region 527758	1762 bp proximal
Tssr148330	transcription start site region 148330	1659 bp downstream