rs108520348 SNP Detail

Summary

• ID
  rs108520348
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:17151943 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                      A GTTACCTGAC AACAGCAAGG TAGCCCAGCC CACTATAAAA
  GGAGCTGCTT GGCCCCTCCT CTTTCTCTCT TAAGCTCCTG TTCTCTCCTT GTCTCTTACC
  W
  CTTGCTCTCA TTCTCCCCTT CCCTTCCCCC CTCTTTCCAT GTGGCCATGG CCAGCTTCTA
  CTTCCCTACA CGTCTCCCTT TCTCTGCCTT TCTACAATAA A                    
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135879846	ENSMUSSNP3274178	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108520348					SNP	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:17151943 () rs orientation: reverse

Symbol	Name	Function Class
Gm58605	predicted gene, 58605	within coordinates
Rr344746	regulatory region 344746	858 bp proximal
Tssr150151	transcription start site region 150151	176 bp upstream
Tssr152558	transcription start site region 152558	89 bp downstream