rs108522307 SNP Detail

Summary

• ID
  rs108522307
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171487700 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCTCTGCA GTCCCTTCCC
  CAACACTGTC TTTTCTTTAC CGCCATACCT GATTCTCCCG TTTCCATCCC CACCTGCCCC
  AAATCCACCC ACAAAATCTA TTATAGTTCC CCTTCCCATG GAGGAGATTC ATGTGTCTCC
  ACAATCCTTT CCTCTATACC TAACCTCTCT GGGTATACAG ATTGTAGGTT AGTTGTTATT
  R
  TTATTATTAT TTATTTTTTT GGTTTTTCGA GACAGGGTTT CTCTGTATAG CTCTGGCTGT
  CCTGGAACTC ACTTTGTAGA CCAGGCTGGC CTCGAACTCA GAAATCCGCC TGCCTCTGCC
  TCCCGAGTGC AGAGATTAAA GGCGTGCGCT ATCACACCCG GCTGGTTAGT TGTCATTTAT
  TTAATGGGCA ATATCCACAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J
ss120004170	PARCsnp_1.04353	PARC_SEQ	INBRED	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J
rs108522307					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171487700 () rs orientation: forward

Symbol	Name	Function Class
Gm70589	predicted gene, 70589	161 bp downstream
Rr423376	regulatory region 423376	1166 bp distal
Rr423377	regulatory region 423377	1204 bp distal