rs108524282 SNP Detail

Summary

• ID
  rs108524282
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:40156583 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTCTCGCCG GCTTCGCGGA CTCCTGGCTT CGCCCGGAGG
  GTCAGGGGGC TTCCCGGTTC CCCGACGTTG CGCCTCGCTG CTGTGTGCTT GGGGGGGGGG
  C
  CCGCTGCGGC CTCCGCCCGC CCGTGAGCCC CTGCCGCACC CGCCGGTGTG CGGTTTAGCG
  CCGCGGTCAG TTGGGCCCTG GCGTTGTGTC GCGTCGGGA                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325385447	CHEV_17_39982637	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs108524282					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:40156583 () rs orientation: forward

Symbol	Name	Function Class
AY036118	cDNA sequence AY036118	1973 bp downstream
Cpgi9159	CpG island 9159	within coordinates
Gm26917	predicted gene, 26917	within coordinates
Rn18s	18S ribosomal RNA	within coordinates
Rn18s-rs5	18s RNA, related sequence 5	662 bp upstream
Rr331227	regulatory region 331227	1983 bp distal
Rr331228	regulatory region 331228	983 bp distal
Rr331229	regulatory region 331229	within coordinates
Rr339832	regulatory region 339832	within coordinates
Tssr144602	transcription start site region 144602	655 bp upstream
Tssr144603	transcription start site region 144603	760 bp upstream
Tssr144604	transcription start site region 144604	818 bp upstream
Tssr144605	transcription start site region 144605	868 bp upstream
Tssr144606	transcription start site region 144606	926 bp upstream
Tssr144607	transcription start site region 144607	1035 bp upstream
Tssr144608	transcription start site region 144608	1182 bp upstream
Tssr144609	transcription start site region 144609	1326 bp upstream
Tssr144610	transcription start site region 144610	1485 bp upstream
Tssr144611	transcription start site region 144611	1622 bp upstream
Tssr144612	transcription start site region 144612	1751 bp upstream
Tssr144613	transcription start site region 144613	1870 bp upstream
Tssr144614	transcription start site region 144614	1902 bp upstream
Tssr144615	transcription start site region 144615	1989 bp upstream
Tssr148054	transcription start site region 148054	1531 bp upstream
Tssr148055	transcription start site region 148055	1282 bp upstream
Tssr148056	transcription start site region 148056	934 bp upstream
Tssr148057	transcription start site region 148057	542 bp upstream
Tssr148058	transcription start site region 148058	51 bp downstream
Tssr148059	transcription start site region 148059	86 bp downstream
Tssr148060	transcription start site region 148060	207 bp downstream
Tssr148061	transcription start site region 148061	316 bp downstream
Tssr148062	transcription start site region 148062	831 bp downstream
Tssr148063	transcription start site region 148063	962 bp downstream
Tssr148064	transcription start site region 148064	1204 bp downstream