rs108524563 SNP Detail

Summary

• ID
  rs108524563
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19193336 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AACGAAAGA GACAAAGAGA AACTCCAGGA
  CTGGAAGACT GCCGAGGACA GGAATAAAGG AGAAGCAGCA AGAAAGgaga gagagagaga
  gagagagaga gagagagaga gagagagaga gagagagaga gagagagaga gagagagaga
  S
  agacagagag agacagagag agagaACTGT GTacctgtca ttcggaccct caggaggttg
  agataatgga ttgctgtgag ttcaagacca tacacaacaa gaccctgtct cagaaaacaa
  aaGCCAAAAT TGAAGCCAGT CCCTGGGTTC                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss148476738	ENSMUSSNP6282499	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
ss322117312	CHEV_7_20044760	CHEVERUD	SCREENING_POP	f	SNP			G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs108524563					SNP	C	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19193336 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18489	CpG island 18489	338 bp distal
Gm23099	predicted gene, 23099	1386 bp downstream
Mark4	MAP/microtubule affinity regulating kinase 4	590 bp upstream
Rr400149	regulatory region 400149	354 bp downstream
Rr643146	regulatory region 643146	601 bp distal
Rr643147	regulatory region 643147	100 bp distal
Tssr64858	transcription start site region 64858	476 bp downstream
Tssr70918	transcription start site region 70918	726 bp upstream
Tssr70919	transcription start site region 70919	672 bp upstream
Tssr70920	transcription start site region 70920	635 bp upstream
Tssr70921	transcription start site region 70921	611 bp upstream
Tssr70922	transcription start site region 70922	555 bp upstream
Tssr70923	transcription start site region 70923	158 bp upstream