rs108525456 SNP Detail

Summary

• ID
  rs108525456
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:88748826 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAACCTGC GACCCCGGGA
  GTTGCTGCTC TAAGAGTCCC GGGGAGCCCG CGCCAGCCAC GTCGCCGCTC CGGCTCCCAT
  CCGAGCGGGA CGCGCGCGGC GTGGAGTCCC AGTCCGGGGC CCGGCCCGGC CCGGGCGGGA
  TGGCTGGGCC CGGAGAAGTA GTGCCCAGGA GGACTCGCGT AAACTTCGGG CGCGGGGCCC
  S
  GATGTGGGGT GGCGACCCCA GCCCGGTTCT CGCGGCCGGA GGCGCCCCCA AGCCTGGCTG
  GCCCGGGCCG GGGGTGGGGT GGGGTGGGGT GGGGGTGGGA CTTGGACTGT TTCGGCGTTG
  CAACATGTGC ACTTCCTGTT CGCCATCTCC TTCGGGGCCG AGGTTACTTC TGCCCTCCGG
  CCCGGCGCTC GGGCCGGGAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss399389881	MGP_WTSI_17_88840738	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	C	C	G	G	C	C	G	C	C	C	C	C	C	G	G	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	G	G	C	C	C	C	G	C	C	G	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs108525456					SNP	G	G	G	C	C	G	G	C	C	G	C	C	C	C	C	C	G	G	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	G	G	C	C	C	C	G	C	C	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss399389881	MGP_WTSI_17_88840738	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:88748826 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9640	CpG island 9640	within coordinates
Foxn2	forkhead box N2	within coordinates
Rr340320	regulatory region 340320	within coordinates
Rr405533	regulatory region 405533	734 bp downstream
Tssr146228	transcription start site region 146228	657 bp downstream
Tssr146229	transcription start site region 146229	611 bp downstream
Tssr146230	transcription start site region 146230	307 bp downstream
Tssr146231	transcription start site region 146231	126 bp upstream
Tssr149806	transcription start site region 149806	422 bp downstream