rs108525700 SNP Detail

Summary

• ID
  rs108525700
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:26728751 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGTCCGCC GCAACACCAC
  GGAGTTGGAT ACACAAACAT AAACATTGCA CCACTCTGAA GGGGTGCCGA GTCAGGAACA
  TTCTGCGGTT TCTTCCTCTT TGCAAGGGGA GGTGTCTTAC TACCATGTGT CTTTGCCCAG
  CAACGTCCGC TTTGGCCTCT CTTAGCTCTT GCGCTCTGCC TAGATTCTTC TGTAAATTCA
  R
  AATACGTTAT TTTTAAAGGG CGTTTTTACA TTCCTTTGAG CATTGATCCT AAAAGAACAG
  CAAAGAAATC TTCAGATAAC ACCACCCTCC CTACATCTCA GAAGAGCGAC AGAAAGAAAA
  AAATTATTTG TTTATTCTAC TTATTCAGCT GAGGACCTCA ACATATTTTT TGCATTGAAT
  CATAAAATGT TACAGCTGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397901242	MGP_WTSI_17_26646722	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs108525700					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397901242	MGP_WTSI_17_26646722	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26728751 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8811	CpG island 8811	754 bp distal
Dusp1	dual specificity phosphatase 1	1305 bp upstream
Gm56886	predicted gene, 56886	within coordinates
Rr339410	regulatory region 339410	within coordinates
Rr392454	regulatory region 392454	1114 bp upstream
Rr405112	regulatory region 405112	1044 bp downstream
Rr405113	regulatory region 405113	672 bp downstream
Rr406958	regulatory region 406958	within coordinates
Tssr5044	transcription start site region 5044	813 bp downstream
Tssr5045	transcription start site region 5045	309 bp upstream
Tssr5046	transcription start site region 5046	256 bp upstream
Tssr5047	transcription start site region 5047	245 bp upstream
Tssr143232	transcription start site region 143232	1097 bp downstream
Tssr143233	transcription start site region 143233	1046 bp downstream
Tssr143234	transcription start site region 143234	1003 bp downstream
Tssr143235	transcription start site region 143235	69 bp downstream
Tssr143236	transcription start site region 143236	36 bp downstream
Tssr146952	transcription start site region 146952	1570 bp upstream
Tssr146953	transcription start site region 146953	1530 bp upstream
Tssr146954	transcription start site region 146954	1295 bp upstream
Tssr146955	transcription start site region 146955	895 bp upstream
Tssr146956	transcription start site region 146956	278 bp upstream
Tssr146957	transcription start site region 146957	208 bp upstream